PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G098000.1
Common NameB456_013G098000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 328aa    MW: 36349.1 Da    PI: 6.5162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G098000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-1656105255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h+  E+rRR++iN++f++Lr+l+P+     ++K + a+ L +++eY+++Lq
  Gorai.013G098000.1  56 RSKHSVTEQRRRSKINERFQRLRDLIPNT----DQKRDTASFLLEVIEYVQYLQ 105
                         899*************************8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1952126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-2452126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.44454104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-1556109No hitNo description
SMARTSM003531.6E-1260110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRTGKGSQEE EEYEEEEFGS KKGGFSSNQT MSFNPNNNST TNKADGKNND KANAIRSKHS  60
VTEQRRRSKI NERFQRLRDL IPNTDQKRDT ASFLLEVIEY VQYLQEKVQK YEDSYQGWSS  120
EPAKLMPWRN SHWHVQSLVG HPQAIKNGSG PGATFARKFD ENNTNINPTV ITSGPNAVET  180
DPIRYVTSKT MDCQTELANN GTHLPIQGEN VLVHPLQRPV SETQSTECLV GNDIPINQQE  240
DLTIEGGTIS ISSVYSQGLL SALAQALQGS GLDLSQANMS VQIDLGKHAN RGLSAKEPHN  300
CPHQAMTHLR DVSSGEDSDN AQKRLKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464562.10.0PREDICTED: transcription factor BIM2-like isoform X1
SwissprotQ9CAA41e-113BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D2VD290.0A0A0D2VD29_G
STRINGPOPTR_0008s11120.11e-131(Populus trichocarpa)
STRINGPOPTR_0010s14740.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-87BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]